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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
255
DNA accessibility
Date released
100
May, 2020
60
May, 2022
28
February, 2021
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
1
November, 2020
1
October, 2019
Available data
83
bam
78
bigWig
60
zippedFastqFolder
59
fastq
38
bed narrowPeak
22
bigBed narrowPeak
12
tsv
1
bed bed3
Organism
255
Homo sapiens
Biosample type
266
tissue
255
primary cell
39
in vitro differentiated cells
28
cell line
Organ
72
epithelium
71
pancreas
8
blood
8
bodily fluid
2
connective tissue
liver
Project
150
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
83
hg19
48
GRCh38
Lab
150
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
11
inconsistent ontology term
files.file_type!
txt
organ_slims!
liver
BIOSAMPLE
ASSAY
255 results
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ATAC-seq
snATAC-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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