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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
907
ChIP-seq
181
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
207
DNA accessibility
Date released
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
8
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
1
August, 2022
Available data
145
bed narrowPeak
64
bam
64
xls
43
bigWig
29
fastq
3
bigBed narrowPeak
2
bed broadPeak
1
bed bed3+
1
tsv
1
txt
Organism
206
Homo sapiens
Biosample type
244
primary cell
207
tissue
30
in vitro differentiated cells
29
cell line
Organ
81
kidney
60
pancreas
21
liver
10
lung
8
bone element
8
limb
8
skeleton
5
adipose tissue
5
connective tissue
4
heart
3
blood vessel
3
brain
3
vasculature
2
artery
2
musculature of body
1
eye
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
189
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
123
GRCh38
90
hg19
Lab
81
Katalin Susztak, Upenn
65
AMP-T2D consortium
26
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
1
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
207 results
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ATAC-seq
snATAC-seq
tissue
kidney
75
6
islet of Langerhans
57
5
liver
20
lung
10
body of pancreas
4
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