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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
312
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
52
DNA accessibility
Date released
16
February, 2023
14
October, 2019
11
May, 2023
4
March, 2019
3
February, 2021
2
January, 2018
2
March, 2020
2
October, 2017
1
July, 2019
Available data
bed narrowPeak
64
bam
64
xls
43
bigWig
29
fastq
5
bed bed3
4
tsv
3
bigBed narrowPeak
2
bed broadPeak
Organism
55
Homo sapiens
Biosample type
161
primary cell
55
tissue
21
in vitro differentiated cells
19
cell line
Organ
21
pancreas
14
kidney
4
bone element
4
brain
4
skeleton
2
adipose tissue
2
connective tissue
1
eye
1
musculature of body
1
pituitary gland
1
skin of body
Project
44
AMP
11
T1D
Genome assembly (visualization)
16
GRCh38
13
hg19
Lab
28
AMP-T2D consortium
11
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
files.file_type!
bed narrowPeak
bedpe
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
snDrop-seq
tissue
islet of Langerhans
31
kidney
11
adipose tissue
2
acetabular part of hip bone
1
brain
1
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