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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
824
total RNA-seq
354
ChIP-seq
127
ATAC-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
WGBS
6
RRBS
5
DNase-seq
3
pCHi-C
3
snDrop-seq
1
FAIRE-seq
Assay category
824
Transcription
127
DNA accessibility
Date released
567
February, 2021
290
May, 2020
216
May, 2021
196
February, 2023
150
August, 2021
120
July, 2018
103
May, 2022
94
August, 2017
52
October, 2019
50
July, 2019
46
November, 2019
40
September, 2018
25
February, 2020
19
March, 2020
19
September, 2020
15
February, 2018
12
May, 2023
8
October, 2017
7
August, 2020
5
December, 2019
5
January, 2019
5
November, 2020
5
September, 2017
4
March, 2019
3
January, 2018
2
October, 2018
Available data
890
bam
873
bigWig
822
tsv
94
fastq
23
bed narrowPeak
5
bigBed narrowPeak
4
bed bedgraph
2
bed bed3
Organism
951
Homo sapiens
Biosample type
686
tissue
152
primary cell
87
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
387
adipose tissue
145
liver
118
pancreas
66
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
29
epithelium
8
skeleton
6
limb
Project
906
AMP
45
T1D
Genome assembly (visualization)
894
hg19
845
GRCh38
Lab
906
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
52
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
951 results
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Clear Filters
total RNA-seq
ATAC-seq
tissue
adipose tissue
381
liver
143
islet of Langerhans
89
bone tissue
58
subcutaneous adipose tissue
2
1
+ See 10 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 28 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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