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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
0
whole genome sequencing assay
Assay category
103
DNA accessibility
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
34
bigWig
32
fastq
24
bam
22
bigBed narrowPeak
1
tsv
Organism
103
Homo sapiens
Biosample type
72
primary cell
19
cell line
12
tissue
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
24
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
54
AMP
49
HPAP
Genome assembly (visualization)
38
hg19
34
GRCh38
Lab
54
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
103 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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