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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
490
ChIP-seq
261
single cell RNA-seq
256
ATAC-seq
237
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
35
pCHi-C
25
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
256
DNA accessibility
Date released
100
May, 2020
77
May, 2022
56
February, 2023
May, 2021
14
October, 2019
4
March, 2020
3
January, 2018
2
March, 2019
Available data
73
bigWig
66
bed narrowPeak
64
bam
39
zippedFastqFolder
19
fastq
14
tsv
5
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
256
Homo sapiens
Biosample type
151
primary cell
102
tissue
in vitro differentiated cells
3
cell line
Organ
77
pancreas
53
epithelium
28
eye
20
liver
4
bone element
4
skeleton
3
adipose tissue
3
connective tissue
2
brain
1
blood
1
bodily fluid
1
musculature of body
1
pituitary gland
1
skin of body
Project
206
AMP
39
HPAP
11
T1D
Genome assembly (visualization)
206
hg19
GRCh38
Lab
166
AMP-T2D consortium
39
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
12
inconsistent ontology term
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
month_released!
May, 2021
October, 2022
BIOSAMPLE
ASSAY
256 results
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Clear Filters
ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
macrophage
11
+ See 30 more…
tissue
islet of Langerhans
46
liver
20
retina
15
pigmented layer of retina
12
adipose tissue
3
+ See 6 more…
cell line
EndoC_BH1
2
GM12878
1
See all biosamples
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