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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ATAC-seq
73
total RNA-seq
55
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
89
DNA accessibility
Date released
57
May, 2022
16
May, 2021
11
February, 2023
3
October, 2019
2
March, 2019
Available data
39
zippedFastqFolder
19
bam
19
fastq
18
bed narrowPeak
bigWig
2
tsv
1
bed broadPeak
Organism
89
Homo sapiens
Biosample type
39
primary cell
34
tissue
16
cell line
Organ
89
pancreas
67
epithelium
28
eye
14
connective tissue
4
bone element
4
skeleton
2
brain
1
adipose tissue
1
pituitary gland
1
skin of body
Project
39
AMP
39
HPAP
11
T1D
Genome assembly (visualization)
40
hg19
GRCh38
Lab
39
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
19
AMP-T2D consortium
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
16
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bigWig
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
89 results
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ATAC-seq
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
islet of Langerhans
34
cell line
EndoC_BH1
16
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