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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 605ChIP-seq
  • 297ATAC-seq
  • 263single cell RNA-seq
  • 250total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 32Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 297DNA accessibility
Date released
  • 100May, 2020
  • 77May, 2022
  • 68February, 2023
  • 21May, 2021
  • 16October, 2019
  • 4February, 2021
  • 4March, 2020
  • 3January, 2018
  • 2August, 2021
  • 2March, 2019
Available data
  • 85bigWig
  • 70bed narrowPeak
  • 64bam
  • 39zippedFastqFolder
  • 19fastq
  • 14tsv
  • 10bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3bigBed narrowPeak
  • 3txt
  • 1bed broadPeak
Organism
  • 297Homo sapiens
Biosample type
  • 151primary cell
  • 102tissue
  • 25in vitro differentiated cells
  • 19cell line
Organ
  • 93pancreas
  • 69epithelium
  • 28eye
  • 20connective tissue
  • 20liver
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 2brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1pituitary gland
  • 1skin of body
Project
  • 247AMP
  • 39HPAP
  • 11T1D
Genome assembly (visualization)
  • 261hg19
  • GRCh38
Lab
  • 197AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 5Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 31inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

297 results

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Clear Filters
ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic alpha cell22
pancreatic beta cell13
macrophage11
tissue
islet of Langerhans46
liver20
retina15
pigmented layer of retina12
adipose tissue3
in vitro differentiated cells
adipocyte8
embryonic stem cell6
chondrocyte5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH118
GM128781
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