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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
total RNA-seq
186
ChIP-seq
136
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
136
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
2
March, 2019
Available data
50
bam
50
bed narrowPeak
41
fastq
39
zippedFastqFolder
27
bigWig
8
bigBed narrowPeak
2
tsv
1
bed broadPeak
Organism
136
Homo sapiens
Biosample type
60
tissue
57
primary cell
19
cell line
Organ
136
pancreas
89
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
76
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
56
hg19
44
GRCh38
Lab
55
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
assembly!
hg18
lab.title!
Mark McCarthy, Oxford
month_released!
September, 2018
BIOSAMPLE
ASSAY
136 results
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ATAC-seq
tissue
islet of Langerhans
56
body of pancreas
4
primary cell
pancreatic alpha cell
32
pancreatic beta cell
19
pancreatic acinar cell
6
cell line
EndoC_BH1
19
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