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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
263
single cell RNA-seq
246
total RNA-seq
215
ATAC-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
48
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
215
DNA accessibility
Date released
64
August, 2021
58
February, 2023
May, 2020
39
May, 2022
16
May, 2021
13
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
July, 2019
1
October, 2017
Available data
99
bed narrowPeak
64
xls
39
zippedFastqFolder
12
bigWig
12
fastq
12
tsv
3
bam
1
bed broadPeak
Organism
215
Homo sapiens
Biosample type
138
tissue
61
primary cell
16
cell line
Organ
81
pancreas
75
kidney
65
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
3
brain
1
eye
1
pituitary gland
1
skin of body
Project
155
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
234
GRCh38
hg19
Lab
78
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
assembly!
hg19
biosample_type!
stem cell
month_released!
May, 2020
BIOSAMPLE
ASSAY
215 results
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ATAC-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
26
cerebellum (Hemisphere)
1
posterior cingulate cortex
1
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
cell line
EndoC_BH1
16
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