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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 270ATAC-seq
  • 263single cell RNA-seq
  • 248total RNA-seq
  • 87RNA microarray
  • 83snATAC-seq
  • 75WGBS
  • 53pCHi-C
  • 26DNase-seq
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 270DNA accessibility
Date released
  • 64August, 2021
  • 58February, 2023
  • 55May, 2020
  • 39May, 2022
  • 16May, 2021
  • 13October, 2019
  • 11May, 2023
  • 7August, 2020
  • 3September, 2020
  • 2March, 2019
  • 1July, 2019
  • 1October, 2017
Available data
  • 99bed narrowPeak
  • 64xls
  • 39zippedFastqFolder
  • 12bigWig
  • 12fastq
  • 12tsv
  • 3bam
  • 1bed broadPeak
Organism
  • 270Homo sapiens
Biosample type
  • 138tissue
  • 116primary cell
  • 16cell line
Organ
  • 81pancreas
  • 75kidney
  • 65epithelium
  • 35artery
  • 35blood vessel
  • 35heart
  • 35vasculature
  • 3brain
  • 1eye
  • 1pituitary gland
  • 1skin of body
Project
  • 210AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • hg19
  • 234GRCh38
Lab
  • 133AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 11Kyle Gaulton, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 22inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

270 results

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Clear Filters
ATAC-seq
tissue
kidney75
coronary artery35
islet of Langerhans26
cerebellum (Hemisphere)1
posterior cingulate cortex1
primary cell
pancreatic alpha cell29
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic beta cell16
macrophage11
cell line
EndoC_BH116
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