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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
590
ChIP-seq
177
DNase-seq
123
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
123
DNA accessibility
Date released
64
August, 2021
February, 2023
20
November, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
2
August, 2017
2
March, 2019
2
October, 2019
Available data
107
bed narrowPeak
64
xls
45
bam
18
bigWig
10
fastq
2
bigBed narrowPeak
1
bed broadPeak
Organism
123
Homo sapiens
Biosample type
123
tissue
49
primary cell
17
in vitro differentiated cells
10
cell line
Organ
75
kidney
26
pancreas
8
bone element
8
limb
8
skeleton
4
heart
3
adipose tissue
3
blood vessel
3
connective tissue
3
vasculature
2
artery
2
brain
1
liver
1
nerve
1
spleen
Project
123
AMP
Genome assembly (visualization)
123
GRCh38
89
hg19
Lab
75
Katalin Susztak, Upenn
45
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
123 results
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ATAC-seq
tissue
kidney
75
islet of Langerhans
22
body of pancreas
4
heart left ventricle
2
adipose tissue(adipose white tissue)
1
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