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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1305ChIP-seq
  • 1279total RNA-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 261DNA accessibility
Date released
  • 45February, 2023
  • 45May, 2020
  • 38May, 2022
  • 26November, 2019
  • 22February, 2021
  • 18May, 2021
  • 14September, 2018
  • 12August, 2021
  • 9October, 2019
  • 7October, 2017
  • 5August, 2017
  • 5July, 2019
  • 5September, 2017
  • 4March, 2020
  • 3January, 2018
  • 2March, 2019
  • 1November, 2020
Available data
  • 179bed narrowPeak
  • 172bam
  • 124bigWig
  • 49fastq
  • 27bigBed narrowPeak
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2tsv
  • 1bed broadPeak
Organism
  • 261Homo sapiens
Biosample type
  • 122tissue
  • 84primary cell
  • 42in vitro differentiated cells
  • 13cell line
Organ
  • 71pancreas
  • 38epithelium
  • 27eye
  • 25connective tissue
  • 23liver
  • 12bone element
  • 12heart
  • 12skeleton
  • 11blood vessel
  • 11vasculature
  • 10artery
  • 8limb
  • 6adipose tissue
  • 1blood
  • 1bodily fluid
  • 1brain
  • 1musculature of body
  • 1nerve
  • 1spleen
Project
  • 261AMP
Genome assembly (visualization)
  • 261hg19
  • 234GRCh38
Lab
  • 210AMP-T2D consortium
  • 23Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 20inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

261 results

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Clear Filters
ATAC-seq
tissue
islet of Langerhans42
liver20
retina15
pigmented layer of retina12
body of pancreas4
primary cell
monocyte15
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
smooth muscle cell of the coronary artery8
EndoC_BH13
GM128781
HepG21
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