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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
104
ATAC-seq
50
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
104
DNA accessibility
Date released
103
February, 2023
100
May, 2020
76
August, 2021
38
May, 2022
34
May, 2021
26
November, 2019
22
February, 2021
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
November, 2020
Available data
46
bam
45
bigWig
1
bed broadPeak
1
fastq
Organism
104
Homo sapiens
Biosample type
100
primary cell
4
tissue
Organ
4
pancreas
Project
104
AMP
Genome assembly (visualization)
47
hg19
2
GRCh38
Lab
100
AMP-T2D consortium
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
4
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
104 results
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ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
islet of Langerhans
4
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