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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
876
ChIP-seq
248
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
26
WGBS
23
pCHi-C
17
snATAC-seq
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
248
DNA accessibility
Date released
68
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
March, 2020
1
January, 2018
Available data
208
bed narrowPeak
64
bam
64
xls
42
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
248
Homo sapiens
Biosample type
248
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
51
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
248
AMP
T1D
Genome assembly (visualization)
158
GRCh38
121
hg19
Lab
130
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
award.project!
T1D
organ_slims!
bone marrow
musculature of body
BIOSAMPLE
ASSAY
248 results
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ATAC-seq
tissue
kidney
75
islet of Langerhans
57
coronary artery
36
liver
20
retina
15
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