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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
total RNA-seq
218
ChIP-seq
123
ATAC-seq
80
single cell RNA-seq
51
WGBS
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
123
DNA accessibility
Date released
39
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
47
bam
46
bed narrowPeak
41
bigWig
39
zippedFastqFolder
38
fastq
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
123
Homo sapiens
Biosample type
71
primary cell
33
tissue
19
cell line
Organ
123
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
74
AMP
49
HPAP
Genome assembly (visualization)
59
GRCh38
53
hg19
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
award.project!
community
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
29
body of pancreas
4
cell line
EndoC_BH1
19
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