Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 142DNA accessibility
Date released
  • 66August, 2021
  • 39May, 2022
  • 14February, 2023
  • 11May, 2023
  • 7August, 2020
  • 3September, 2020
  • 1March, 2019
  • 1October, 2017
Available data
  • 68bed narrowPeak
  • 64xls
  • 39zippedFastqFolder
  • 16bigWig
  • 11fastq
  • 3bed bedgraph
  • 3txt
  • 1bed broadPeak
Organism
  • 142Homo sapiens
Biosample type
  • 88tissue
  • 49primary cell
  • 5in vitro differentiated cells
Organ
  • 75kidney
  • 62pancreas
  • 49epithelium
  • 2connective tissue
Project
  • 82AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 87GRCh38
  • 7hg19
Lab
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 11Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

142 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans13
primary cell
pancreatic alpha cell29
pancreatic beta cell16
pancreatic acinar cell4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
adipocyte1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego