Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1853ChIP-seq
  • 1468total RNA-seq
  • 449ATAC-seq
  • 358single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 78snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 449DNA accessibility
Date released
  • 100February, 2023
  • 100May, 2020
  • 77May, 2022
  • 34May, 2021
  • 26November, 2019
  • 22February, 2021
  • 22October, 2019
  • 14September, 2018
  • 10August, 2021
  • 7August, 2020
  • 7October, 2017
  • 6July, 2019
  • 5August, 2017
  • 5September, 2017
  • 4March, 2020
  • 3January, 2018
  • 3March, 2019
  • 3September, 2020
  • 1November, 2020
Available data
  • 210bed narrowPeak
  • 175bam
  • 130bigWig
  • 60fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 4bed bed3+
  • 4bed bedgraph
  • 1bed broadPeak
Organism
  • 449Homo sapiens
Biosample type
  • 200primary cell
  • 183tissue
  • 37in vitro differentiated cells
  • 29cell line
Organ
  • 150pancreas
  • 103epithelium
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 23connective tissue
  • 23liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 389AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 254hg19
  • 157GRCh38
Lab
  • 343AMP-T2D consortium
  • 49Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 41inconsistent ontology term
  • 1inconsistent replicate
award.rfa!
  • AMP2
BIOSAMPLE
ASSAY

449 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
tissue
islet of Langerhans66
coronary artery36
liver20
retina15
pigmented layer of retina12
in vitro differentiated cells
neural progenitor cell10
adipocyte7
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
embryonic stem cell5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego