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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
total RNA-seq
356
ChIP-seq
207
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
27
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
207
DNA accessibility
Date released
100
May, 2020
39
May, 2022
29
May, 2021
12
February, 2023
10
February, 2021
7
August, 2020
3
September, 2020
2
March, 2020
2
October, 2019
1
January, 2018
1
November, 2019
1
November, 2020
Available data
94
bam
81
bigWig
49
bed narrowPeak
39
zippedFastqFolder
32
fastq
bigBed narrowPeak
13
tsv
2
bed bed3
Organism
207
Homo sapiens
Biosample type
tissue
178
primary cell
in vitro differentiated cells
29
cell line
Organ
69
epithelium
68
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
2
connective tissue
2
liver
1
blood
1
bodily fluid
Project
158
AMP
49
HPAP
Genome assembly (visualization)
75
hg19
37
GRCh38
Lab
158
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
31
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
tissue
files.file_type!
bigBed narrowPeak
organ_slims!
pericardium
BIOSAMPLE
ASSAY
207 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
monocyte
15
+ See 33 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
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