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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1571
ChIP-seq
1291
total RNA-seq
439
ATAC-seq
358
single cell RNA-seq
200
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
51
pCHi-C
19
Hi-C
10
MeRIP-seq
6
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
439
DNA accessibility
Date released
100
May, 2020
77
May, 2022
64
August, 2021
56
February, 2023
29
May, 2021
21
November, 2019
17
October, 2019
14
September, 2018
11
May, 2023
10
February, 2021
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
November, 2020
Available data
208
bed narrowPeak
143
bam
117
bigWig
64
xls
61
fastq
39
zippedFastqFolder
25
bigBed narrowPeak
14
tsv
7
bed bed3
2
bed broadPeak
Organism
439
Homo sapiens
Biosample type
218
tissue
200
primary cell
in vitro differentiated cells
21
cell line
Organ
152
pancreas
103
epithelium
75
kidney
44
artery
44
blood vessel
vasculature
43
heart
28
eye
23
liver
12
bone element
12
skeleton
8
connective tissue
8
limb
6
adipose tissue
3
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
379
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
205
hg19
167
GRCh38
Lab
261
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
32
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
organ_slims!
pericardium
vasculature
BIOSAMPLE
ASSAY
439 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
liver
20
retina
15
pigmented layer of retina
12
+ See 23 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
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