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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1566
ChIP-seq
1311
total RNA-seq
415
ATAC-seq
361
single cell RNA-seq
196
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
47
pCHi-C
25
Hi-C
19
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
415
DNA accessibility
Date released
100
May, 2020
77
May, 2022
64
August, 2021
29
February, 2023
29
May, 2021
21
November, 2019
16
October, 2019
14
September, 2018
11
May, 2023
10
February, 2021
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
4
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
November, 2020
Available data
184
bed narrowPeak
147
bam
121
bigWig
64
xls
61
fastq
39
zippedFastqFolder
25
bigBed narrowPeak
14
tsv
7
bed bed3
2
bed broadPeak
Organism
415
Homo sapiens
Biosample type
200
primary cell
194
tissue
in vitro differentiated cells
21
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
vasculature
45
artery
eye
23
liver
12
bone element
12
skeleton
8
connective tissue
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
355
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
181
hg19
171
GRCh38
Lab
237
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
32
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
organ_slims!
eye
vasculature
BIOSAMPLE
ASSAY
415 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
tissue
kidney
75
islet of Langerhans
67
liver
20
body of pancreas
4
adipose tissue
3
+ See 24 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
See all biosamples
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