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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
176
ATAC-seq
176
single cell RNA-seq
148
total RNA-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
24
Hi-C
11
RRBS
10
MeRIP-seq
10
WGBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
176
DNA accessibility
Date released
91
February, 2023
21
May, 2021
20
May, 2022
16
October, 2019
11
May, 2023
4
February, 2021
4
March, 2020
3
January, 2018
3
March, 2019
2
August, 2021
1
October, 2017
Available data
239
bed narrowPeak
bam
xls
58
bigWig
29
fastq
11
bed bed3
7
bed bedgraph
5
bigBed narrowPeak
4
bed bed3+
3
txt
2
bed broadPeak
2
tsv
Organism
176
Homo sapiens
Biosample type
132
tissue
primary cell
25
in vitro differentiated cells
19
cell line
Organ
38
pancreas
35
artery
35
blood vessel
35
heart
35
vasculature
30
epithelium
28
eye
20
connective tissue
20
liver
11
kidney
4
bone element
4
skeleton
3
adipose tissue
2
brain
1
blood
1
bodily fluid
1
musculature of body
1
pituitary gland
1
skin of body
Project
165
AMP
11
T1D
Genome assembly (visualization)
89
hg19
49
GRCh38
Lab
120
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Kyle Gaulton, UCSD
11
Katalin Susztak, Upenn
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
21
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
bam
xls
month_released!
October, 2022
BIOSAMPLE
ASSAY
176 results
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Clear Filters
ATAC-seq
tissue
coronary artery
35
islet of Langerhans
30
liver
20
retina
15
pigmented layer of retina
12
+ See 8 more…
in vitro differentiated cells
adipocyte
8
embryonic stem cell
6
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 3 more…
cell line
EndoC_BH1
18
GM12878
1
See all biosamples
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