Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1592ChIP-seq
  • 1280total RNA-seq
  • 331ATAC-seq
  • 182single cell RNA-seq
  • 181DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 28snATAC-seq
  • 24Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 331DNA accessibility
Date released
  • 91February, 2023
  • 76August, 2021
  • 38May, 2022
  • 26November, 2019
  • 21February, 2021
  • 21May, 2021
  • 20October, 2019
  • 11May, 2023
  • 8October, 2017
  • 6July, 2019
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 2August, 2017
Available data
  • 239bed narrowPeak
  • 91bam
  • 64xls
  • 58bigWig
  • 29fastq
  • 11bed bed3
  • 7bed bedgraph
  • 5bigBed narrowPeak
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
  • 2tsv
Organism
  • 331Homo sapiens
Biosample type
  • 260tissue
  • primary cell
  • 42in vitro differentiated cells
  • 29cell line
Organ
  • 81pancreas
  • 75kidney
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 31epithelium
  • 28eye
  • 23connective tissue
  • 22liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 320AMP
  • 11T1D
Genome assembly (visualization)
  • 185GRCh38
  • 177hg19
Lab
  • 192AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 30inconsistent ontology term
  • 1inconsistent replicate
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

331 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans68
coronary artery36
liver20
retina15
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego