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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
total RNA-seq
172
ChIP-seq
85
single cell RNA-seq
59
ATAC-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
6
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
59
DNA accessibility
Date released
39
May, 2022
7
August, 2020
5
May, 2021
3
February, 2023
3
September, 2020
2
August, 2021
Available data
39
zippedFastqFolder
20
bigWig
10
fastq
4
bed narrowPeak
3
bed bedgraph
3
txt
Organism
59
Homo sapiens
Biosample type
tissue
49
primary cell
10
in vitro differentiated cells
Organ
49
epithelium
49
pancreas
2
connective tissue
Project
49
HPAP
10
AMP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
AMP-T2D consortium
49
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
biosample_type!
stem cell
tissue
lab.title!
AMP-T2D consortium
organ_slims!
vein
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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