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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
148
ATAC-seq
80
single cell RNA-seq
67
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
148
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
64
bam
64
bed narrowPeak
55
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
tsv
1
bed broadPeak
Organism
148
Homo sapiens
Biosample type
71
primary cell
58
tissue
19
cell line
Organ
148
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
88
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
69
hg19
57
GRCh38
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
biosample_type!
stem cell
month_released!
March, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
148 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
54
body of pancreas
4
cell line
EndoC_BH1
19
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