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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
  • 496total RNA-seq
  • 271ATAC-seq
  • 189single cell RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 271DNA accessibility
Date released
  • 100May, 2020
  • 39May, 2022
  • 34May, 2021
  • 24February, 2023
  • 14February, 2021
  • 14September, 2018
  • 12August, 2021
  • 7August, 2020
  • 6November, 2019
  • 6October, 2019
  • 5September, 2017
  • 3August, 2017
  • 3September, 2020
  • 2March, 2020
  • 1January, 2018
  • 1November, 2020
Available data
  • 111bam
  • 93bigWig
  • 70bed narrowPeak
  • 39zippedFastqFolder
  • 32fastq
  • 24bigBed narrowPeak
  • 13tsv
  • 7bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
Organism
  • 271Homo sapiens
Biosample type
  • tissue
  • 200primary cell
  • 42in vitro differentiated cells
  • 29cell line
Organ
  • 91epithelium
  • 90pancreas
  • 19connective tissue
  • 8artery
  • 8blood vessel
  • 8heart
  • 8vasculature
  • 2liver
  • 1blood
  • 1bodily fluid
Project
  • 222AMP
  • 49HPAP
Genome assembly (visualization)
  • 139hg19
  • 76GRCh38
Lab
  • 212AMP-T2D consortium
  • 49Klaus Kaestner, Upenn
  • 5Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 41inconsistent ontology term
  • 1inconsistent replicate
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

271 results

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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
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