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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
113
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
28
DNA accessibility
Date released
16
May, 2021
9
February, 2021
2
March, 2020
1
November, 2019
Available data
10
bam
10
bed narrowPeak
2
bigWig
1
bed bed3
1
tsv
Organism
28
Homo sapiens
Biosample type
252
tissue
200
primary cell
42
in vitro differentiated cells
28
cell line
Organ
19
epithelium
19
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
blood
1
bodily fluid
1
liver
Project
28
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
files.file_type!
vcf
organ_slims!
blood
limb
BIOSAMPLE
ASSAY
28 results
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ATAC-seq
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
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