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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
154
single cell RNA-seq
122
ATAC-seq
53
ChIP-seq
35
snATAC-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
122
DNA accessibility
Date released
100
May, 2020
May, 2022
12
February, 2023
7
August, 2020
3
September, 2020
Available data
84
bam
78
bigWig
bed narrowPeak
32
fastq
22
bigBed narrowPeak
12
tsv
1
bed bed3
Organism
122
Homo sapiens
Biosample type
122
primary cell
52
tissue
21
in vitro differentiated cells
19
cell line
Organ
10
epithelium
10
pancreas
Project
112
AMP
10
HPAP
Genome assembly (visualization)
45
hg19
10
GRCh38
Lab
112
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
August, 2022
May, 2022
BIOSAMPLE
ASSAY
122 results
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ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
pancreatic alpha cell
7
gabaergic neuron
3
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