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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 279ChIP-seq
  • 247total RNA-seq
  • 200ATAC-seq
  • 187single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 31DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 200DNA accessibility
Date released
  • 100May, 2020
  • 39May, 2022
  • 14September, 2018
  • 13May, 2021
  • 12February, 2023
  • 7August, 2020
  • 5September, 2017
  • 3August, 2017
  • 3September, 2020
  • 2October, 2019
  • 1February, 2021
  • 1November, 2020
Available data
  • 84bam
  • 78bigWig
  • 39bed narrowPeak
  • 39zippedFastqFolder
  • 32fastq
  • 22bigBed narrowPeak
  • 12tsv
  • 1bed bed3
Organism
  • 200Homo sapiens
Biosample type
  • 260tissue
  • 200primary cell
  • 42in vitro differentiated cells
  • 29cell line
Organ
  • 72epithelium
  • 71pancreas
  • 2connective tissue
  • 1liver
Project
  • 151AMP
  • 49HPAP
Genome assembly (visualization)
  • 84hg19
  • 49GRCh38
Lab
  • 151AMP-T2D consortium
  • 49Klaus Kaestner, Upenn
Audit category:
  • 12inconsistent ontology term
BIOSAMPLE
ASSAY

200 results

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ATAC-seq
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
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