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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
872
ChIP-seq
258
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
258
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
7
October, 2017
6
July, 2019
3
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
208
bed narrowPeak
64
bam
64
xls
42
bigWig
28
fastq
5
bed bed3
3
bigBed narrowPeak
bed broadPeak
1
tsv
Organism
258
Homo sapiens
Biosample type
258
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
60
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
247
AMP
11
T1D
Genome assembly (visualization)
157
GRCh38
121
hg19
Lab
131
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
bed broadPeak
csv
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
66
coronary artery
36
liver
20
retina
15
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