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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
722
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
64
DNA accessibility
Date released
20
November, 2019
18
May, 2022
8
February, 2021
7
October, 2017
6
July, 2019
2
August, 2017
2
October, 2019
1
March, 2019
Available data
208
bed narrowPeak
64
bam
64
xls
43
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
64
Homo sapiens
Biosample type
84
primary cell
64
tissue
17
in vitro differentiated cells
10
cell line
Organ
42
pancreas
8
bone element
8
limb
8
skeleton
4
heart
3
adipose tissue
3
blood vessel
3
connective tissue
3
vasculature
2
artery
2
brain
1
liver
1
nerve
1
spleen
Project
64
AMP
Genome assembly (visualization)
61
hg19
45
GRCh38
Lab
45
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
organ_slims!
adrenal gland
mammary gland
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
tissue
islet of Langerhans
38
body of pancreas
4
heart left ventricle
2
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
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