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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
784
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
221
DNA accessibility
Date released
64
August, 2021
44
February, 2023
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
4
March, 2019
2
August, 2017
2
January, 2018
2
July, 2019
2
March, 2020
Available data
169
bed narrowPeak
64
xls
60
bam
39
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
221
Homo sapiens
Biosample type
221
tissue
200
primary cell
42
in vitro differentiated cells
21
cell line
Organ
75
kidney
62
pancreas
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
210
AMP
11
T1D
Genome assembly (visualization)
119
GRCh38
118
hg19
Lab
92
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
August, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
liver
20
retina
15
pigmented layer of retina
12
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