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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 356DNA accessibility
Date released
  • 103February, 2023
  • 66August, 2021
  • 59May, 2022
  • 55May, 2020
  • 21May, 2021
  • 16October, 2019
  • 11May, 2023
  • 7August, 2020
  • 4February, 2021
  • 4March, 2020
  • 3January, 2018
  • 3March, 2019
  • 3September, 2020
  • 1October, 2017
Available data
  • 278bed narrowPeak
  • bam
  • 136bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 356Homo sapiens
Biosample type
  • 196tissue
  • 116primary cell
  • 25in vitro differentiated cells
  • 19cell line
Organ
  • 87pancreas
  • 79epithelium
  • 75kidney
  • 35artery
  • 35blood vessel
  • 35heart
  • 35vasculature
  • 28eye
  • 20connective tissue
  • 20liver
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 2brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1pituitary gland
  • 1skin of body
Project
  • 296AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 123GRCh38
  • 89hg19
Lab
  • 187AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 20Karen Mohlke, UNC
  • 16Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

356 results

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Clear Filters
ATAC-seq
tissue
kidney75
coronary artery35
islet of Langerhans30
liver20
retina15
primary cell
pancreatic alpha cell29
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic beta cell16
macrophage11
in vitro differentiated cells
adipocyte8
embryonic stem cell6
chondrocyte5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH118
GM128781
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