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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
191
total RNA-seq
142
ATAC-seq
76
single cell RNA-seq
49
WGBS
24
DNase-seq
9
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
142
DNA accessibility
Date released
47
February, 2023
39
May, 2022
16
May, 2021
14
September, 2018
8
February, 2021
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
July, 2019
2
March, 2020
2
October, 2019
1
November, 2019
Available data
82
bed narrowPeak
39
zippedFastqFolder
35
bam
30
bigWig
25
fastq
22
bigBed narrowPeak
1
tsv
Organism
142
Homo sapiens
Biosample type
65
primary cell
50
tissue
27
cell line
Organ
145
pancreas
96
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
liver
21
connective tissue
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
100
AMP
42
HPAP
Genome assembly (visualization)
73
GRCh38
49
hg19
Lab
100
AMP-T2D consortium
42
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
files.file_type!
bed bedgraph
month_released!
August, 2020
BIOSAMPLE
ASSAY
142 results
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ATAC-seq
primary cell
pancreatic alpha cell
30
pancreatic beta cell
21
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
tissue
coronary artery
36
pigmented layer of retina
12
thoracic aorta
1
tibial artery
1
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
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