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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1527total RNA-seq
  • 546ChIP-seq
  • 369single cell RNA-seq
  • 253ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 253DNA accessibility
Date released
  • 100May, 2020
  • 39May, 2022
  • 38February, 2023
  • 21May, 2021
  • 16October, 2019
  • 11May, 2023
  • 7August, 2020
  • 4February, 2021
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 2October, 2017
  • 1July, 2019
Available data
  • bed narrowPeak
  • 175bam
  • 136bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 253Homo sapiens
Biosample type
  • 161primary cell
  • 52tissue
  • 21in vitro differentiated cells
  • 19cell line
Organ
  • 88pancreas
  • 67epithelium
  • 17connective tissue
  • 11kidney
  • 4bone element
  • 4brain
  • 4skeleton
  • 2adipose tissue
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1musculature of body
  • 1pituitary gland
  • 1skin of body
Project
  • 193AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 82hg19
  • 26GRCh38
Lab
  • 171AMP-T2D consortium
  • 49Klaus Kaestner, Upenn
  • 16Kyle Gaulton, UCSD
  • 11Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
  • 1Struan F.A. Grant, CHOP
Audit category:
  • 30inconsistent ontology term
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

253 results

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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell29
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic beta cell16
macrophage11
tissue
islet of Langerhans31
kidney11
adipose tissue2
acetabular part of hip bone1
brain1
in vitro differentiated cells
adipocyte7
chondrocyte5
embryonic stem cell5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH118
GM128781
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