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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 395ATAC-seq
  • 263single cell RNA-seq
  • 249total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 29Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 395DNA accessibility
Date released
  • 100February, 2023
  • 74August, 2021
  • 57May, 2022
  • 55May, 2020
  • 29May, 2021
  • 26November, 2019
  • 21February, 2021
  • 17October, 2019
  • 11May, 2023
  • 4March, 2019
  • 1November, 2020
Available data
  • 278bed narrowPeak
  • 175bam
  • bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 395Homo sapiens
Biosample type
  • 217tissue
  • 122primary cell
  • 30in vitro differentiated cells
  • 26cell line
Organ
  • 111pancreas
  • 75kidney
  • 69epithelium
  • 43artery
  • 43blood vessel
  • 43heart
  • 43vasculature
  • 28eye
  • 16connective tissue
  • 12bone element
  • 12skeleton
  • 6limb
  • 2adipose tissue
  • 2brain
  • 2liver
  • 1pituitary gland
  • 1skin of body
Project
  • 345AMP
  • 39HPAP
  • 11T1D
Genome assembly (visualization)
  • 183GRCh38
  • 137hg19
Lab
  • 248AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 39Klaus Kaestner, Upenn
  • 29Kyle Gaulton, UCSD
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
Audit category:
  • 35inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

395 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans65
coronary artery35
retina15
pigmented layer of retina12
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic alpha cell22
monocyte13
pancreatic beta cell13
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte5
chondrocyte5
immature adipocyte2
cell line
EndoC_BH117
smooth muscle cell of the coronary artery8
HepG21
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