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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 1014ChIP-seq
  • 470ATAC-seq
  • 235single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 470DNA accessibility
Date released
  • 103February, 2023
  • 100May, 2020
  • 76August, 2021
  • 59May, 2022
  • 34May, 2021
  • 26November, 2019
  • 22February, 2021
  • 22October, 2019
  • 11May, 2023
  • 6July, 2019
  • 4March, 2020
  • 3January, 2018
  • 3March, 2019
  • 1November, 2020
Available data
  • 278bed narrowPeak
  • 175bam
  • 136bigWig
  • 64xls
  • fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 470Homo sapiens
Biosample type
  • 231tissue
  • 168primary cell
  • 42in vitro differentiated cells
  • 29cell line
Organ
  • 96pancreas
  • 75kidney
  • 71epithelium
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 23connective tissue
  • 22liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 4adipose tissue
  • 3brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
Project
  • 420AMP
  • 39HPAP
  • 11T1D
Genome assembly (visualization)
  • 212hg19
  • 192GRCh38
Lab
  • 312AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 39Klaus Kaestner, Upenn
  • 20Karen Mohlke, UNC
  • 16Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 42inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

470 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans48
coronary artery36
liver20
retina15
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic alpha cell22
monocyte15
pancreatic beta cell13
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
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