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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
705
ChIP-seq
663
total RNA-seq
48
ATAC-seq
14
DNase-seq
11
WGBS
8
pCHi-C
6
small RNA-seq
5
Hi-C
5
single cell RNA-seq
3
RRBS
2
Capture-C
2
STARR-seq
1
RNA microarray
Assay category
48
DNA accessibility
Date released
20
May, 2022
10
February, 2023
6
February, 2021
4
October, 2019
2
August, 2017
2
August, 2021
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
31
bed narrowPeak
30
bigWig
8
bam
7
bed bed3
5
bigBed narrowPeak
4
bed bed3+
4
bed bedgraph
3
fastq
Organism
48
Homo sapiens
Biosample type
27
tissue
17
in vitro differentiated cells
3
primary cell
1
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
48
AMP
Genome assembly (visualization)
48
hg19
8
GRCh38
Lab
26
AMP-T2D consortium
20
Karen Mohlke, UNC
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
files.file_type!
vcf
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
tissue
liver
20
adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
right lobe of liver
1
+ See 1 more…
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
osteoblast
2
Liver fetal (hepatocyte)
1
cell line
HepG2
1
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