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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 467ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 467DNA accessibility
Date released
  • 103February, 2023
  • 100May, 2020
  • 77May, 2022
  • 34May, 2021
  • 26November, 2019
  • 22February, 2021
  • 22October, 2019
  • 14September, 2018
  • 12August, 2021
  • 11May, 2023
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5August, 2017
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 1November, 2020
Available data
  • 278bed narrowPeak
  • 175bam
  • 136bigWig
  • xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 467Homo sapiens
Biosample type
  • 200primary cell
  • 196tissue
  • 42in vitro differentiated cells
  • 29cell line
Organ
  • 152pancreas
  • 103epithelium
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 25connective tissue
  • 23liver
  • 12bone element
  • 12skeleton
  • 11kidney
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 407AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 261hg19
  • 170GRCh38
Lab
  • 343AMP-T2D consortium
  • 49Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 11Katalin Susztak, Upenn
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 42inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • xls
BIOSAMPLE
ASSAY

467 results

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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
tissue
islet of Langerhans68
coronary artery36
liver20
retina15
pigmented layer of retina12
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
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