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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 175DNA accessibility
Date released
  • 45May, 2020
  • 26November, 2019
  • 18February, 2021
  • 18May, 2022
  • 14September, 2018
  • 13May, 2021
  • 10August, 2021
  • 7October, 2017
  • 6July, 2019
  • 6October, 2019
  • 5August, 2017
  • 5September, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 278bed narrowPeak
  • 175bam
  • 136bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 175Homo sapiens
Biosample type
  • 84primary cell
  • 64tissue
  • 17in vitro differentiated cells
  • 10cell line
Organ
  • 65pancreas
  • 24epithelium
  • 12heart
  • 11blood vessel
  • 11vasculature
  • 10artery
  • 8bone element
  • 8limb
  • 8skeleton
  • 5connective tissue
  • 3adipose tissue
  • 3liver
  • 2brain
  • 1nerve
  • 1spleen
Project
  • 175AMP
Genome assembly (visualization)
  • 172hg19
  • 111GRCh38
Lab
  • 156AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 15inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

175 results

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Clear Filters
ATAC-seq
primary cell
monocyte15
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
tissue
islet of Langerhans38
body of pancreas4
heart left ventricle2
adipose tissue(adipose white tissue)1
cerebellum (Hemisphere)1
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
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