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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1308
total RNA-seq
211
single cell RNA-seq
170
DNase-seq
114
ChIP-seq
31
pCHi-C
18
small RNA-seq
16
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
Assay category
16
DNA accessibility
Date released
12
February, 2023
2
March, 2020
1
March, 2019
1
October, 2017
Available data
270
bed narrowPeak
167
bam
134
bigWig
64
xls
61
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
16
Homo sapiens
Biosample type
12
primary cell
3
tissue
1
cell line
Organ
4
pancreas
1
epithelium
Project
16
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
14
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
16 results
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ATAC-seq
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
tissue
islet of Langerhans
3
cell line
EndoC_BH1
1
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