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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1325ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 278DNA accessibility
Date released
  • 76August, 2021
  • 65February, 2023
  • 38May, 2022
  • 26November, 2019
  • 18February, 2021
  • 14September, 2018
  • 13May, 2021
  • 6October, 2017
  • 6October, 2019
  • 5August, 2017
  • 5July, 2019
  • 5September, 2017
  • 1November, 2020
Available data
  • 278bed narrowPeak
  • 175bam
  • 136bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 278Homo sapiens
Biosample type
  • 208tissue
  • 39primary cell
  • 21in vitro differentiated cells
  • 10cell line
Organ
  • 64kidney
  • 64pancreas
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 36epithelium
  • 27eye
  • 23liver
  • 8bone element
  • 8connective tissue
  • 8limb
  • 8skeleton
  • 4adipose tissue
  • 1nerve
  • 1spleen
Project
  • 278AMP
Genome assembly (visualization)
  • 208GRCh38
  • 179hg19
Lab
  • 172AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 12inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

278 results

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Clear Filters
ATAC-seq
tissue
kidney64
islet of Langerhans37
coronary artery36
liver20
retina15
pigmented layer of retina12
body of pancreas4
heart left ventricle2
adipose tissue1
adipose tissue(adipose white tissue)1
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
omental fat pad1
proximal epiphysis1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
right atrium auricular region1
right lobe of liver1
spleen1
subcutaneous adipose tissue1
thoracic aorta1
tibial artery1
tibial nerve1
primary cell
monocyte13
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
osteoblast2
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte1
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
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