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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 1278total RNA-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 136DNA accessibility
Date released
  • 45May, 2020
  • 20May, 2022
  • 14September, 2018
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5August, 2017
  • 5May, 2021
  • 5October, 2019
  • 5September, 2017
  • 4March, 2020
  • 3February, 2023
  • 3January, 2018
  • 3September, 2020
  • 2August, 2021
  • 1February, 2021
Available data
  • 278bed narrowPeak
  • 175bam
  • 136bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 136Homo sapiens
Biosample type
  • 78primary cell
  • 43tissue
  • 12in vitro differentiated cells
  • 3cell line
Organ
  • 41pancreas
  • 34epithelium
  • 21liver
  • 9connective tissue
  • 4adipose tissue
  • 4heart
  • 3blood vessel
  • 3vasculature
  • 2artery
  • 2brain
  • 2limb
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1spleen
Project
  • 126AMP
  • 10HPAP
Genome assembly (visualization)
  • 124hg19
  • 51GRCh38
Lab
  • 95AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 10Klaus Kaestner, Upenn
  • 5Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell13
pancreatic beta cell10
pancreatic acinar cell5
pancreatic ductal cell4
B cell2
CD8-positive, alpha-beta T cell2
T follicular helper cell2
T-helper 1 cell2
T-helper 17 cell2
T-helper 2 cell2
central memory CD8-positive, alpha-beta T cell2
effector CD4-positive, alpha-beta T cell2
effector T cell2
effector memory CD8-positive, alpha-beta T cell2
gamma-delta T cell2
mature natural killer cell2
memory B cell2
memory T cell2
memory regulatory T cell2
monocyte2
naive B cel2
naive regulatory T cell2
naive thymus-derived CD8-positive, alpha-beta T cell2
regulatory T cell2
immature natural killer cell1
myeloid dendritic cell1
natural killer cell1
osteoblast1
plasma cell1
plasmacytoid dendritic cell1
tissue
liver20
body of pancreas4
islet of Langerhans3
adipose tissue2
heart left ventricle2
cerebellum (Hemisphere)1
coronary artery1
omental fat pad1
posterior cingulate cortex1
right atrium auricular region1
right lobe of liver1
skeletal muscle tissue1
spleen1
subcutaneous adipose tissue1
thoracic aorta1
tibial artery1
tibial nerve1
in vitro differentiated cells
embryonic stem cell6
adipocyte3
Progenitor cell of Hypothalamus (neural progenitor cell)1
neuron cell of Hypothalamus (neuron)1
osteoblast1
cell line
EndoC_BH12
GM128781
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