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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 1278total RNA-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 136DNA accessibility
Date released
  • 45May, 2020
  • 20May, 2022
  • 14September, 2018
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5August, 2017
  • 5May, 2021
  • 5October, 2019
  • 5September, 2017
  • 4March, 2020
  • 3February, 2023
  • 3January, 2018
  • 3September, 2020
  • 2August, 2021
  • 1February, 2021
Available data
  • 278bed narrowPeak
  • 175bam
  • 136bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4bed bed3+
  • 3txt
  • 2bed broadPeak
Organism
  • 136Homo sapiens
Biosample type
  • 78primary cell
  • 43tissue
  • 12in vitro differentiated cells
  • 3cell line
Organ
  • 41pancreas
  • 34epithelium
  • 21liver
  • 9connective tissue
  • 4adipose tissue
  • 4heart
  • 3blood vessel
  • 3vasculature
  • 2artery
  • 2brain
  • 2limb
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1spleen
Project
  • 126AMP
  • 10HPAP
Genome assembly (visualization)
  • 124hg19
  • 51GRCh38
Lab
  • 95AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 10Klaus Kaestner, Upenn
  • 5Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell13
pancreatic beta cell10
pancreatic acinar cell5
pancreatic ductal cell4
B cell2
tissue
liver20
body of pancreas4
islet of Langerhans3
adipose tissue2
heart left ventricle2
in vitro differentiated cells
embryonic stem cell6
adipocyte3
Progenitor cell of Hypothalamus (neural progenitor cell)1
neuron cell of Hypothalamus (neuron)1
osteoblast1
cell line
EndoC_BH12
GM128781
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