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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
139
total RNA-seq
100
single cell RNA-seq
31
ATAC-seq
12
DNase-seq
11
WGBS
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
31
DNA accessibility
Date released
14
September, 2018
7
October, 2017
5
August, 2017
5
September, 2017
Available data
172
bed narrowPeak
156
bam
95
bigWig
31
fastq
27
bigBed narrowPeak
14
tsv
12
bed bed3
4
bed bed3+
4
bed bedgraph
Organism
31
Homo sapiens
Biosample type
22
primary cell
9
tissue
Organ
26
pancreas
22
epithelium
2
adipose tissue
2
connective tissue
1
brain
1
liver
1
spleen
Project
31
AMP
Genome assembly (visualization)
31
GRCh38
30
hg19
Lab
31
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
organ_slims!
large intestine
BIOSAMPLE
ASSAY
31 results
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ATAC-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
spleen
1
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