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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
182
ATAC-seq
105
single cell RNA-seq
82
snATAC-seq
47
WGBS
16
pCHi-C
10
MeRIP-seq
7
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
182
DNA accessibility
Date released
77
May, 2022
64
August, 2021
14
February, 2023
11
May, 2023
7
August, 2020
5
May, 2021
March, 2019
3
September, 2020
1
October, 2017
Available data
104
bed narrowPeak
64
xls
39
bigWig
39
zippedFastqFolder
29
fastq
18
bam
3
bed bedgraph
3
txt
1
bed broadPeak
Organism
182
Homo sapiens
Biosample type
125
tissue
49
primary cell
8
in vitro differentiated cells
Organ
79
pancreas
75
kidney
49
epithelium
20
liver
connective tissue
Project
122
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
86
GRCh38
47
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
3
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
KPMP
month_released!
March, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
30
liver
20
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
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