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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
205
total RNA-seq
174
ATAC-seq
152
single cell RNA-seq
80
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
174
DNA accessibility
Date released
77
May, 2022
66
August, 2021
February, 2023
11
May, 2023
7
August, 2020
5
May, 2021
4
March, 2019
3
September, 2020
1
October, 2017
Available data
104
bed narrowPeak
64
xls
39
zippedFastqFolder
38
bigWig
30
fastq
19
bam
2
bed broadPeak
Organism
174
Homo sapiens
Biosample type
118
tissue
49
primary cell
7
in vitro differentiated cells
Organ
75
kidney
72
pancreas
49
epithelium
20
liver
2
connective tissue
Project
125
AMP
49
HPAP
Genome assembly (visualization)
88
GRCh38
48
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
lab.title!
AMP-T2D consortium
month_released!
February, 2023
organ_slims!
intestine
organ_slims!!
intestine
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
23
liver
20
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
in vitro differentiated cells
embryonic stem cell
5
adipocyte
1
osteoblast
1
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