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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
150
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
150
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
2
March, 2019
Available data
64
bam
64
bed narrowPeak
55
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
tsv
1
bed broadPeak
Organism
150
Homo sapiens
Biosample type
71
primary cell
60
tissue
19
cell line
Organ
150
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
90
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
70
hg19
58
GRCh38
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
150 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
56
body of pancreas
4
cell line
EndoC_BH1
19
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