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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
153
ChIP-seq
22
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
22
DNA accessibility
Date released
10
February, 2023
5
February, 2021
3
October, 2019
1
August, 2017
1
January, 2018
November, 2019
1
November, 2020
1
October, 2017
Available data
7
bigWig
6
bed bed3
5
bed narrowPeak
4
bam
4
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
2
fastq
Organism
22
Homo sapiens
Biosample type
15
in vitro differentiated cells
5
tissue
2
primary cell
Organ
132
pancreas
102
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
liver
22
connective tissue
12
bone element
12
skeleton
8
limb
5
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
22
AMP
Genome assembly (visualization)
22
hg19
4
GRCh38
Lab
22
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
month_released!
November, 2019
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
in vitro differentiated cells
adipocyte
7
chondrocyte
5
immature adipocyte
2
preadipocyte
1
tissue
adipose tissue
3
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
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