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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
total RNA-seq
80
single cell RNA-seq
69
ATAC-seq
48
ChIP-seq
8
DNase-seq
4
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
69
DNA accessibility
Date released
20
November, 2019
16
May, 2021
14
September, 2018
5
September, 2017
4
March, 2020
4
October, 2017
3
August, 2017
3
October, 2019
Available data
46
bam
46
bed narrowPeak
30
bigWig
26
fastq
22
bigBed narrowPeak
2
tsv
Organism
69
Homo sapiens
Biosample type
28
tissue
22
primary cell
19
cell line
Organ
69
pancreas
54
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
connective tissue
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
3
liver
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
69
AMP
Genome assembly (visualization)
50
hg19
46
GRCh38
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
69 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
24
body of pancreas
4
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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