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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
154
ChIP-seq
109
ATAC-seq
24
snATAC-seq
17
pCHi-C
11
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
109
DNA accessibility
Date released
64
August, 2021
18
May, 2022
11
February, 2023
11
May, 2023
5
May, 2021
Available data
82
bed narrowPeak
64
xls
18
bam
18
fastq
5
bigWig
Organism
109
Homo sapiens
Biosample type
104
tissue
5
in vitro differentiated cells
Organ
75
kidney
29
pancreas
Project
98
AMP
11
T1D
Genome assembly (visualization)
75
GRCh38
23
hg19
Lab
337
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
December, 2019
July, 2019
BIOSAMPLE
ASSAY
109 results
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ATAC-seq
tissue
kidney
75
islet of Langerhans
29
in vitro differentiated cells
embryonic stem cell
5
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